The class that holds the description of a kinetic model.
This class holds several members describing the data associated with the description of a kinetic model.
A model is comprised of:
Attributes
| reactions | (_Collection_Accessor) The processes in the model. |
| transformations | (_Collection_Accessor) The transformations in the model. |
| parameters | (_Parameters_Accessor) The parameters in the model. |
| varnames | (list of str) The names of the variables defined in the model. This list should be treated as read-only and is internally refreshed everytime a reaction is added or changed. |
| extvariables | (list of str) The names of the external variables defined in the model. This list should be treated as read-only and is internally refreshed everytime a reaction or parameter is added or changed. |
| init | (_init_Accessor) The initial state of the model. |
| with_bounds | (_With_Bounds_Accessor) Iterates through the parameters in the model for which Bounds were assigned. |
Methods
| checkRates() | |
| copy([new_title]) | |
| estimate([timecourses]) | |
| get_bounds(name) | |
| get_init([names, default]) | |
| getp(name) | |
| info([no_check]) | |
| reset_bounds(name) | |
| reset_init() | |
| scan(plan, **kwargs) | |
| set_bounds(name, value) | |
| set_init(*p, **pdict) | |
| set_reaction(name, stoichiometry[, rate, pars]) | Insert or modify a reaction in the model. |
| set_transformation(name[, rate, pars]) | |
| set_uncertain(uncertainparameters) | |
| set_variable_dXdt(name[, rate, pars]) | |
| setp(name, value) | |
| solve(**kwargs) | |
| update(*p, **pdict) |
Insert or modify a reaction in the model.
| Parameters: | name : str
stoichiometry : str
rate : str or int or float.
pars : dict of iterable of (name, value) pairs
|
|---|